standardName	Name	PMID	Title	Journal	Publication_Date	Peptide_seq	ORF_seq	RNA_seq	Main_Experimental_Methods	Inferred_Function	Subcellular_Localization	rinalmo_Point_Biserial_Corr	rinalmo_Point_Biserial_P	rinalmo_Spearman_Corr	rinalmo_Spearman_P	rinalmo_ORF_Mean	rinalmo_Non_ORF_Mean	dnabert_Point_Biserial_Corr	dnabert_Point_Biserial_P	dnabert_Spearman_Corr	dnabert_Spearman_P	dnabert_ORF_Mean	dnabert_Non_ORF_Mean	cnn_Point_Biserial_Corr	cnn_Point_Biserial_P	cnn_Spearman_Corr	cnn_Spearman_p	cnn_ORF_Mean	cnn_Non_ORF_Mean	rnabert_Point_Biserial_Corr	rnabert_Point_Biserial_P	rnabert_Spearman_Corr	rnabert_Spearman_p	rnabert_ORF_Mean	rnabert_Non_ORF_Mean	rnafm_Point_Biserial_Corr	rnafm_Point_Biserial_P	rnafm_Spearman_Corr	rnafm_Spearman_p	rnafm_ORF_Mean	rnafm_Non_ORF_Mean	cnn_prob	dnabert_prob	rnafm_prob	rinalmo_prob	rnabert_prob
SMIM26	SMIM26_561	37009826	LINC00493-encoded microprotein SMIM26 exerts anti-metastatic activity in renal cell carcinoma.	EMBO reports	2023	MYRNEFTAWYRRMSVVYGIGTWSVLGSLLYYSRTMAKSSVDQKDGSASEVPSELSERPKGFYVETVVTYKEDFVPNTEKILNYWKSWTGGPGTEP	ATGTATCGAAATGAGTTCACGGCCTGGTACCGGCGGATGTCGGTGGTCTACGGGATCGGCACCTGGTCTGTGTTGGGCTCACTGCTTTACTATAGCCGGACAATGGCGAAGTCGTCAGTAGACCAAAAGGATGGCTCAGCAAGTGAAGTACCCAGTGAACTCTCTGAACGCCCAAAAGGATTTTATGTGGAAACAGTTGTCACATATAAAGAAGATTTTGTTCCAAATACAGAAAAGATCCTCAACTATTGGAAATCATGGACTGGTGGCCCTGGTACAGAACCATGA	CCCGCCTCTGCCGTGGGCCTGCGAGAATCGAGGCACTCGCTGGCGTACCCATGTATCGAAATGAGTTCACGGCCTGGTACCGGCGGATGTCGGTGGTCTACGGGATCGGCACCTGGTCTGTGTTGGGCTCACTGCTTTACTATAGCCGGACAATGGCGAAGTCGTCAGTAGACCAAAAGGATGGCTCAGCAAGTGAAGTACCCAGTGAACTCTCTGAACGCCCAAAAGGATTTTATGTGGAAACAGTTGTCACATATAAAGAAGATTTTGTTCCAAATACAGAAAAGATCCTCAACTATTGGAAATCATGGACTGGTGGCCCTGGTACAGAACCATGACTGGCTGCTGAATTCTGAAAACCAGGACTTGGTTCAACATTTAAATTTGATAGTTGCCCTGATTCCCATTTTGGGTTTGTGAAAAGTGTATGTATTTAAATTTGCTGTAAAACATAATCACTAATAATATGCAATAAATATTTTCTTGAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Western blotting and immunoprecipitation;Immunofluorescence assays;Phalloidin staining of filamentous actin (F‐Actin);Mitochondrial respiration rate measurement;Migration and invasion assay in vitro;Immunohistochemistry and RNA in situ hybridization;RNA immunoprecipitation;Ribosome–nascent chain complex extraction;RNA‐seq	SMIM26 is a mitochondrial microprotein that inhibits the growth and metastasis of clear cell renal cell carcinoma (ccRCC) (anti-metastasis). It forms a complex with acylglycerol kinase (AGK) and glutathione transport regulator (SLC25A11) at its N-terminus, thereby enhancing the localization of AGK in mitochondria, inhibiting AGK-mediated AKT phosphorylation, and maintaining the efficiency of mitochondrial glutathione (GSH) input and respiratory metabolism, ultimately limiting cell migration/invasion and lung metastasis.	Mitochondria	0.346465665	2.89E-17	0.400090285	5.59E-23	1.059973121	0.922865748	0.493942064	7.62516E-36	0.473598726	1.0473E-32	0.154782634	0.14229	0.235042747	1.76295E-08	0.270889768	6.83625E-11	0.056678243	0.034878232	-0.055733764	0.18745043	-0.08059943	0.056406764	0.911789179	1.094817281	-0.130524839	0.001948937	-0.305529096	1.38E-13	0.971577525	1.029703379	0.845211446	0.999075413	0.998466134	0.999996305	0.582303643
SMIM22	SMIM22_394	29765154	The cancer-associated microprotein CASIMO1 controls cell proliferation and interacts with squalene epoxidase modulating lipid droplet formation.	Oncogene	2018	MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSSPGPRRESPRKERPKGVDNLALEP	ATGGCTGTGTCCACAGAGGAGCTGGAGGCCACGGTTCAGGAAGTCCTGGGGAGACTGAAGAGCCACCAGTTTTTCCAGTCCACATGGGACACTGTTGCCTTCATTGTTTTCCTCACCTTCATGGGCACCGTGCTGCTCCTGCTGCTGCTGGTCGTCGCCCACTGCTGCTGCTGCAGCTCCCCCGGGCCCCGCAGGGAAAGCCCCAGGAAGGAAAGACCCAAGGGAGTGGATAACTTGGCCCTGGAACCCTGA	GGAGCCGGAAGCAGGAAGCAGCCTGTGCTCCCCAGGACCTGCCTGGTTGGGGGAATTGGAGGCTTCTAGGAGGTGGCACGGTGCACGCCAAGATGGCTGTGTCCACAGAGGAGCTGGAGGCCACGGTTCAGGAAGTCCTGGGGAGACTGAAGAGCCACCAGTTTTTCCAGTCCACATGGGACACTGTTGCCTTCATTGTTTTCCTCACCTTCATGGGCACCGTGCTGCTCCTGCTGCTGCTGGTCGTCGCCCACTGCTGCTGCTGCAGCTCCCCCGGGCCCCGCAGGGAAAGCCCCAGGAAGGAAAGACCCAAGGGAGTGGATAACTTGGCCCTGGAACCCTGACCCTGTGTCTCCTGCCCGGTGGCAGTAACAAAGCCTTCTGTCTGCCCAGA	Microarray (Gene expression profiling);RACE (Rapid Amplification of cDNA Ends);Northern Blot;RT-qPCR;Western Blot;Immunofluorescence (IF);Confocal Microscopy;Co-immunoprecipitation (Co-IP);Mass Spectrometry (LC-MS/MS);siRNA/siPOOL Knockdown (RNA interference);BrdU Assay (Cell proliferation);Flow Cytometry (FACS) (Cell cycle analysis);Wound Healing Assay (Migration);Live Cell Imaging;Nile Red Staining (Lipid droplet detection)	This lncRNA translation product, as a pro-cancer peptide, interacts with SQLE (squalene epoxidase), a key enzyme in cholesterol synthesis, leading to the accumulation of SQLE protein and promoting lipid droplet formation. This interaction further regulates the reorganization of the actin cytoskeleton and activates the ERK/MAPK signaling pathway, thereby driving breast cancer cell proliferation, cell cycle progression (G0/G1 phase transition), and cell migration.	Cytoplasm;Late Endosomes/Lysosomes	0.148072098	0.003218445	0.137204296	0.006378035	1.010085464	0.958552718	0.518420777	1.75035E-28	0.508985179	2.35513E-27	0.159445946	0.145216351	-0.053340463	0.290892378	-0.046943204	0.352708818	0.064162709	0.071113639	-0.091170909	0.070652038	-0.23917795	1.57E-06	0.913677752	1.151780128	-0.092107968	0.067795122	-0.143897189	0.004208278	0.984659493	1.01713717	0.584136844	0.977239728	0.765585661	0.992796361	0.539073348
MTLN	MTLN_427	29949756	Mitoregulin: A lncRNA-Encoded Microprotein that Supports Mitochondrial Supercomplexes and Respiratory Efficiency.	Cell reports	2018	MADVSERTLQLSVLVAFASGVLLGWQANRLRRRYLDWRKRRLQDKLAATQKKLDLA	ATGGCGGATGTGTCAGAGAGGACACTGCAGTTGTCCGTGCTAGTAGCCTTCGCTTCTGGAGTACTCCTGGGCTGGCAGGCGAACCGACTGCGGAGGCGCTACTTGGACTGGAGGAAAAGGAGGCTGCAGGACAAGCTGGCGGCGACGCAGAAGAAGCTGGACCTGGCCTGA	GCGCTGCACGCCGGCGGCAGCCATGGCGGATGTGTCAGAGAGGACACTGCAGTTGTCCGTGCTAGTAGCCTTCGCTTCTGGAGTACTCCTGGGCTGGCAGGCGAACCGACTGCGGAGGCGCTACTTGGACTGGAGGAAAAGGAGGCTGCAGGACAAGCTGGCGGCGACGCAGAAGAAGCTGGACCTGGCCTGAGACTCTGCGCCTTCCGCCCCATTCTGTCCCCCTCATGGCCACCTTGCCATGTCCGCGCCGGAGCCCCGGTCCGCCGGCGCCCAGAACCAGGCTTGCCACACAGTCCCCGCCTGCCATGGCCGGCTCTTCCTGGAGTGTTGCTTGTTGAAGATGCATATAGACTACCGGAAAGAAATGACTTCTTCTTGCACTTTATGAATCAATTTTATTTTTAAAATAAAAAAATTAAACATC	Ribosome-profiling / GWIPS-viz (ribo-seq) & in-silico sORF prediction (Phobius/TMHMM);custom polyclonal antibody + western blots (tissues & fractions);proteinase-K topology assays and digitonin extraction (submitochondrial fractionation);cardiolipin pull-down and lipid-strip binding assays;blue-native PAGE (BN-PAGE) and in-gel complex I activity;doxycycline-inducible overexpression and siRNA knockdown	it supports mitochondrial respiratory efficiency and complex/supercomplex assembly/stability — modulates mitochondrial membrane potential, increases respiration (OCR), increases mitochondrial Ca²⁺ retention capacity, reduces mitochondrial ROS	Inner Mitochondrial Membrane (IMM)	0.129189117	0.007518848	0.117835623	0.014838028	1.020183325	0.972666025	-0.136515003	0.004714578	-0.196276381	4.43143E-05	0.151054951	0.154627069	0.244195353	3.2421E-07	0.265760236	2.45896E-08	0.065736823	0.041097887	0.083770805	0.083808383	0.113764303	0.018694316	1.1687783	0.888165355	0.180032381	0.000184107	0.241448642	4.43E-07	1.045346498	0.963963568	0.970691502	0.905197382	0.942554951	0.996907532	0.523765266
lnc-NDRG1-1	lnc-NDRG1-1_508	36127332	Regulatory mechanisms and function of hypoxia-induced long noncoding RNA NDRG1-OT1 in breast cancer cells.	Cell death & disease	2022	MGILSEKIHRAQRALAVVFGTNELPSLLDGGLWRPPADLPGSCTTALYFSFWLTVDFLIGSLVRVN	ATGGGCATCCTTTCGGAAAAAATTCATAGAGCGCAGAGGGCCTTGGCTGTGGTGTTTGGCACTAACGAGCTTCCCTCTCTCCTAGATGGCGGACTGTGGCGGCCTCCCGCAGATCTCCCAGGTTCCTGTACTACTGCCTTGTACTTTTCATTTTGGCTCACCGTGGATTTTCTCATAGGAAGTTTGGTCAGAGTGAATTGA	GGACAAGGCAGGGCAGGGCAGCGGGCGGATGGGCATCCTTTCGGAAAAAATTCATAGAGCGCAGAGGGCCTTGGCTGTGGTGTTTGGCACTAACGAGCTTCCCTCTCTCCTAGATGGCGGACTGTGGCGGCCTCCCGCAGATCTCCCAGGTTCCTGTACTACTGCCTTGTACTTTTCATTTTGGCTCACCGTGGATTTTCTCATAGGAAGTTTGGTCAGAGTGAATTGAATATTGTAAGTCAGCCACTGGGACCCGAGGATTTCTGGGACCCCGCAGTTGGGAGGAGGAAGTAGTCCAGCCTTCCAGGTGGCGTGAGAGGCAATGACTCGTTACCTGCCGCCCATCACCTTGGAGGCCTTCCCTGGCCTTGAGTAGAAAAGTCGGGGATCGGGGCAAGAGAGGCTGAGTACGGATGGGAAACTATTGTGCACAAGTCTTTCCAGAGGAGTTTCTTAATGAGATATTTGTATTTATTTCCAGACCAATAAATTTGTAACTTTGCAGCGG	qPCR;Western blotting;Luciferase reporter assay;Chromatin Immunoprecipitation (ChIP);RNA Immunoprecipitation (RIP);Nuclear-cytoplasmic fractionation;MTT assay;Colony formation assay;Wound healing assay;Transwell invasion assay;Tube formation assay;Xenograft tumor model;Bioluminescence imaging (IVIS);Immunofluorescence	This lncRNA directly binds to the promoter and activates transcription under hypoxic conditions via HIF-1α. NDRG1-OT1 primarily acts as a molecular sponge (miRNA sponge) for miR-875-3p, relieving the inhibition of downstream targets by this miRNA, thereby significantly promoting the proliferation, colony formation, migration, invasion, and angiogenesis of triple-negative breast cancer (TNBC) cells. Although its encoded small peptide was identified in this study, the main functional mechanism is attributed to the action of its ceRNA at the RNA level.	Cytoplasm	0.001181577	0.978806046	0.037594349	0.397806511	0.992448628	0.991989076	0.082823726	0.062131056	0.062245482	0.161260571	0.151236637	0.148990251	0.049301728	0.267369047	0.025653099	0.564032613	0.053659752	0.048585445	0.05509652	0.21508816	-0.084700522	0.056419728	1.112705112	0.926289439	0.042325811	0.341070619	-0.00632749	0.886871097	1.009899497	0.987416208	0.130731836	0.821008325	0.19730036	0.209094211	0.70978564
LINC01116	LINC01116_1424	34193551	Cytoplasmic long noncoding RNAs are differentially regulated and translated during human neuronal differentiation.	RNA (New York, N.Y.)	2021	MAHCSLELLSSSHPPTSAFRVAGTAGVSHHAWLICLFKFFIETESQLYCPGWKRTSFPPSDNLFQTSQLKN	ATGGCTCACTGCAGCCTTGAACTCCTGAGCTCAAGTCATCCTCCCACCTCAGCCTTCCGAGTAGCTGGAACTGCAGGTGTGAGCCACCATGCCTGGCTGATTTGTCTTTTTAAATTTTTTATAGAGACCGAGTCTCAACTATATTGTCCAGGCTGGAAAAGAACTTCTTTCCCTCCAAGTGATAACCTTTTCCAGACAAGTCAGCTTAAAAACTGA	GCGAGCCACGGGCCTCGCTGCGGGTTCAAGTGCGTCCGGGTTTGGACGTCGCGGCTCCAGGAGTGTGCTCTCTCTCCTGCCCATCCCCTCCCCGGAGTTCAGCGCATCCGGGGCCCCGGGGACCCCTCTTCCCGGCCCTCCTGGCCGCGCTGGCCCGCCCGCATGGGGCCGAGGTTCCTGGCCGACGCGCGAGGGCGCGGGCGGGTACCGGGTTCCCGTTTTTCCCAGGCCCCGATCCCCGCCCACGCACGAGGCCCCCGGCCCACGCACGAGGCGCCCACGCCCATCGTGGAGGCTCCGCCTGGAAAAGAAGTCCGACTTCCTCTCCAAGCTGCTCCGAGGGGAATGGGGAATCGGCAGGAAATGACCCGAACTGCCAGCCTGCGCCTTTGCAGCCGGCCCTCGCTTTGCTGAAGACGAGCAGCTCCCACCAAAGTCTTGCCTCCCCTTACCCCGAAAGCCCCGCTCAGTTCAATATTTCAAGTGAAAATCTGCCTGTTCGAAAAGAAAATATTCACAAATGAGCAGTGTATTAGAAGACAACTGAATTGCTTCTAAGAATGGGTCTCACTCTGCCATCACCCAGGCTGGAGTGTGGTGGCACCATCATGGCTCACTGCAGCCTTGAACTCCTGAGCTCAAGTCATCCTCCCACCTCAGCCTTCCGAGTAGCTGGAACTGCAGGTGTGAGCCACCATGCCTGGCTGATTTGTCTTTTTAAATTTTTTATAGAGACCGAGTCTCAACTATATTGTCCAGGCTGGAAAAGAACTTCTTTCCCTCCAAGTGATAACCTTTTCCAGACAAGTCAGCTTAAAAACTGACCCAAAGGCCCTGAAGTACACAGTTTTCTTGGAGAAAGAAAAAAATAAGTGAAAAGGACTTGCTGACTTGCTAATTCATTTTGGGGCCTGTGGGTAACATCAGAATGGCAAAGCACTTGGGGCTTTTTTCTAATTTGTATTTTTTTAATCTTCTGAGAAATGACTTTTATATGCCAAGATTCATTCCATGATTAGTTTTTATGACCAAGTTATGAACGCTTTTGAATATGGGGACCTAGAATAGAAATGCTAACCTACCTGCAAGGAGAGCTCTGTGATTGGCATCCCCATCATGCTGTAACTGACACAAAATAAACTTAGGGTAATTGCCGCATAGTGTAACTTTAATGTGTGAGCATACTGTAACATCTGACAAGCTTCTTGATCTAGATCAGCAATGTGTAACCCATTCATTGTTGTCACTCTCAACAAGGCCTTATGGTCAAACATCATCACTCTCACTAAAGAGATAGTTTACTGAAATATACTGAGATTTTGAAACTGGAGTCAAGAGGTAGCACACTGTTTTATGTTGATCCATTTAATGGTCCTTGACAGCCAATAAAAAGACACTGGAAGAATACGTGAATGCAGTAATTG	Poly-Ribo-Seq;Ribo-Seq;RNA-seq;RT-qPCR;RT-qPCR;siRNA knockdown	Contributing to neuronal differentiation.Knockdown of LINC01116 results in a significant reduction of neurite length in differentiated cells, indicating it contributes to neuronal differentiation.	Cytoplasm	0.194732212	1.23E-13	0.120310995	5.30E-06	1.080972791	0.978536248	0.08563858	0.001217463	0.070573116	0.007718879	0.155464756	0.152763213	-0.175157986	2.82416E-11	-0.218415199	7.70402E-17	0.022652833	0.041589208	-0.026990794	0.30876657	-0.072735219	0.006033448	0.928254426	1.013800979	-0.051656449	0.051308175	-0.006891106	0.795004952	0.973048151	1.002894878	0.355824918	0.933273315	0.913526237	0.975330293	0.674032986
LINC00665	LINC00665_1749	31755573	Micropeptide CIP2A-BP encoded by LINC00665 inhibits triple-negative breast cancer progression.	The EMBO journal	2020	MGRWRVSSVESWPFASTGGKLAIATAGTGTQAAPRPFLIRPPDSWALALALM	ATGGGACGCTGGAGGGTCAGCAGCGTGGAGTCCTGGCCTTTTGCGTCCACGGGTGGGAAATTGGCCATTGCCACGGCGGGAACTGGGACTCAGGCTGCCCCCCGGCCGTTTCTCATCCGTCCACCGGACTCGTGGGCGCTCGCACTGGCGCTGATGTAG	GCAGGTGGCCTCCAGGTGCAAAGTGGGAAGTGTGAGTCCTCAGTCTTGGGCTATTCGGCCACGTGCCTGCCGGACATGGGACGCTGGAGGGTCAGCAGCGTGGAGTCCTGGCCTTTTGCGTCCACGGGTGGGAAATTGGCCATTGCCACGGCGGGAACTGGGACTCAGGCTGCCCCCCGGCCGTTTCTCATCCGTCCACCGGACTCGTGGGCGCTCGCACTGGCGCTGATGTAGTTTCCTGACCTCTGACCCGTATTGTCTCCAGATTAAAGGTACGACATTTGGAGGCCCCAGCGAGAAACGTCACCGGGAGAAACGTCACCGGGCGAGAGCCGGGCCCGCTGTGTGCTCCCCCGGAAGGACAGCCAGCTTGTAGGGGGGAGTGCCACCTGAAAAAAAAATTTCCAGGTCCCCAAAGGGTGACCGTCTTCCGGAGGACAGCGGATCGACTACCATGTGGGTGCCCACAAAAATTCCACCTCTGAGTCCTCAACTGCTGACCCCGGGGTCAGTAGACACGGGGTTTCACCATGTTGGCCAGGCCGGTCTTGAACTTGTGACGTCAGGTGATGCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTCCAGATTTTGAACAAATCTCGCTAGAGATTGAACAGAGCTGCGCCTGGATCCCGCCACAGTGAGGAGACCTGAAGACCAGAGAAAACACAGCAAACGGAGTCTTGCTCTGTTGTCCAGGCTGGAGTGTAGTGTGGCGATCTCGGCTCCCTGCAAGAATCTGCCTCCCAGATTCACGCCATTTTCCCACCTCAGCCCCTGGAGTAGCTGGAAGTACAGGCTCCCGCCACCACGCCTGGCTAATTTTGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGGTAGGATGGTCTCGATCTCCTGACCTCATGATCCATCCGCCTTGGCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCTGTTTTTTCATTTCTATTATGATTTGTTCTGTGGAATGTCAGTGACTTAGCGGTGTTTTTCACATGTTTATAAAGCTGAATAGTTCTGTATGTCAGCTCAGCACCCCTAGTGTCAGTCATGCTACTCTCCTGCTGTGCATAGATGGGGGCCTGTCCACACCCAAATCTCCTGGGTTCCCGCTGTCCGCACCTGAAGGTACCCACCAGATGTGTCTGTCACTGCCCTCCATCCACCTTTCTTGTGGTTCTCATGTTTCTGCCTCCCTAGAGACCATTTCTCTCTACAGCAGTAGTTTCCAATAGAAATACAATGCCAGACACATACGTCATTTTAGATTTTCTAGTAGTCACTTTAGAAAAGTGAAAAAGAGGCCAGCTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGAAGGCTGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCCTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGTAGGCAGAGCTTGCAGTGAGCCGAGATAGCGCCACTGCACTCCAGCCTGGGCGACAGAGGGAGACTCCATCTCAAAAAAAAAAAAAAGGTTACAAAGAAACAGGTGAAATTAGTTTTATTTCACCTAAAATGTTAGCATTATCCAAAATATCACTTCAACATCTTATCAAAATAAAAATTATTAA	Ribosome profiling and RNA sequencing data analysis;Plasmid constructs;Lentiviral production and transduction;Immunofluorescence staining;Anti‐CIP2A‐BP antibody preparation;Antibodies and Western blotting;RNA extraction and qRT–PCR;Northern blot analysis;Migration and invasion assays;Polysome profiling analysis;Co‐immunoprecipitation and mass spectrometry;Chromatin immunoprecipitation;RNA interference	lncRNA LINC00665 encodes the micropeptide CIP2A-BP. Translation of this peptide is downregulated by TGF‐β treatment. Mechanistically, we showed that in TNBC cell lines TGF‐β‐activated Smad signaling pathway induced the expression of translation inhibitory protein 4E‐BP1, which inhibited eukaryote translation initiation factor elF4E, leading to reduced translation of CIP2A‐BP from LINC00665. In TNBC, expression of CIP2A‐BP is downregulated which is associated with tumor invasion and metastasis as well as poor overall survival. In vitro knockdown and overexpression studies confirmed that CIP2A‐BP, but not LINC00665 transcript, acts as a tumor suppressor gene in breast cancer development and progression.	Cytoplasm	-0.064029945	0.007392318	-0.051772397	0.030381566	0.951172352	0.99877423	0.090592174	0.000148387	0.073075381	0.002228247	0.156779001	0.15306156	0.094982527	6.9373E-05	0.088733547	0.000202716	0.042094477	0.03131777	-0.01124453	0.638400273	-0.017580477	0.462482571	0.944176435	1.005771995	0.099843817	2.88E-05	0.075092231	0.001674383	1.064810753	0.99270618	0.345547646	0.170626834	0.835015476	0.978718817	0.68162632
LINC00278	LINC00278_528	32169859	A Novel Micropeptide Encoded by Y-Linked LINC00278 Links Cigarette Smoking and AR Signaling in Male Esophageal Squamous Cell Carcinoma.	Cancer research	2020	MLSGQLQPEGRSALPQPGAAL	ATGCTATCAGGACAACTTCAACCCGAGGGGAGATCAGCTCTCCCGCAACCTGGTGCCGCTCTCTGA	GTGAGCCAGCCAGGAGTGAAGACGACAGGTTTGCTGTCTCCTTTGCCTGTGGGTCTGGGGCCCCAGCCTGGGGGAGACCCGTGACTCCAGGCATGCTATCAGGACAACTTCAACCCGAGGGGAGATCAGCTCTCCCGCAACCTGGTGCCGCTCTCTGACAGCACAACAGAACCTAAGGGGCTACAGGATGATTCAAGGAACAGTGTGCTACAGGACCTCGCAAGAAGACCCTCACCAGATGCAGCCCCTCTATGTTGGACTTCCCAGCCTCCGGAAGTTAGAAATGTGCTACAACCACTCAAGGTCTGCAAACAGATTCCTATTTAGATGTTGTTGAGAGCTGAATTTCTGGAACAAGAGATATAGATTAAGACTGTTGTTACATGTTGCCTACATGACTTTCAAAAGCTTGATTCCCAGTGGCGCTCTCAACAGCAGTCATAAACAATGGTAATTCAATGTATATTTATATTCAACTGATATATTAATTGGAATATATTAAAAATACGTATATTTATATTCAGAATA	RNA extraction and qRT-PCR;Chromatin immunoprecipitation–sequencing data analysis;Antibodies and Western blotting;Polysome profiling;Coimmunoprecipitation assay;Mass spectrometry analysis;RNA interference;Micropeptide synthesis	The Y-linked lncRNA LINC00278 encodes a micropeptide termed YY1BM. YY1BM suppresses the transcription of eEF2K by blocks the interaction between YY1 and AR, thereby promoting the activity of eEF2 and resulting in apoptosis of ESCC. LINC00278 has a classical m6A modification motif close to the stop codon of YY1BM, which interacts with YTHDF1 and facilitates the translation of YY1BM.	Cytoplasm	-0.009962718	0.819343883	0.063120991	0.14750044	0.985875189	0.994001925	0.178164647	3.83512E-05	0.153256262	0.000409145	0.155491384	0.148174401	0.106273223	0.014561406	0.118652433	0.006340888	0.0619881	0.046687022	0.047982131	0.271085429	0.160056797	0.000221673	1.153078079	0.979784012	-0.011414646	0.793571641	-0.069170085	0.112389828	0.992324948	0.99878335	0.159129232	0.875478864	0.466308862	0.939315498	0.354645401
HOXB-AS3	HOXB-AS3_611	28985503	A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth.	Molecular cell	2017	MPVLPGTQRYPHQRRRFQAAGGGAESGKRGSEEAPGVAWSGSESGRDAATPAW	ATGCCAGTGCTGCCGGGAACCCAGCGATATCCGCACCAGCGGAGAAGGTTCCAGGCTGCCGGCGGCGGCGCAGAGAGCGGGAAGAGAGGCTCGGAGGAAGCCCCGGGCGTGGCGTGGTCAGGCTCCGAGAGCGGCCGGGATGCGGCCACACCGGCCTGGTAA	GTCATAGCGACTTTTGGGATAGTTTGCTATCGACAAAGGGAGACAAAGTCAAGGGGTGAAGGGAAAGGAGGGCCAAGTAGAGCCTCCACGACCCTCGGCTTCCTCCTCACCAGCTCCCCCTCCCTCCAAGTCCAGTAAGAAGTTGGGCCAAGCTGGAAGGGATTGACCGGCCGTTTCCTCTCCCTCGCCGGCCTCGGCGGAGATTCCAGGCCCTATAGAAACCAGGACGTCCCTTAGCGCCACCGCCTCACATGCCAGTGCTGCCGGGAACCCAGCGATATCCGCACCAGCGGAGAAGGTTCCAGGCTGCCGGCGGCGGCGCAGAGAGCGGGAAGAGAGGCTCGGAGGAAGCCCCGGGCGTGGCGTGGTCAGGCTCCGAGAGCGGCCGGGATGCGGCCACACCGGCCTGGTAAACTCGCACCTCTTAGGATCTTGCTCCCGGACTCATTCCCTTCCCCACCCCCTATTTTAAAGTTTTATTTGGGTCGTCTGTATCAATTTAGAACGAGATAAATTAAGACAAAGAAAGTAAAATAAATCGAAATAAAATATAGGAATAGCTCTTGGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	RT-PCR and qRT-PCR; immunofluorescence staining; Western blotting; co-immunoprecipitation and mass spectrometry analysis; RT-PCR and PKM splicing analysis; RNA affinity purification; qRT-PCR for miR-18a	HOXB-AS3 is a tumor suppressor and regulator for PKM splicing.The HOXB-AS3 peptide, not HOXB-AS3 lncRNA, suppresses CRC growth by blocking hnRNP A1-dependent PKM splicing, miR-18a processing, and aerobic glycolysis.	Nucleus	0.187123195	3.21E-06	0.184487069	4.43E-06	1.045208931	0.973747015	0.41723736	3.91069E-27	0.441246989	1.68337E-30	0.158504772	0.147510749	0.220082458	3.87444E-08	0.248708585	4.56719E-10	0.064547949	0.040687095	-0.052360827	0.19617955	-0.072546134	0.073146591	0.888027966	1.041800022	-0.145561433	0.000306287	-0.267249784	1.88E-11	0.94872576	1.018047452	0.350215971	0.979667962	0.942235827	0.973868012	0.666573107
CRNDE	CRNDE_561	25978564	The Novel Gene CRNDE Encodes a Nuclear Peptide (CRNDEP) Which Is Overexpressed in Highly Proliferating Tissues.	PloS one	2015	MLAEIHPKAGLQSLQFIMELLYWLLEGGDSEDKEDATGNVEMKNIQPLVFEISCDVFQSRCKEHGKIKVLEWFKYVLGIPVYRL	ATGTTGGCTGAAATTCATCCCAAGGCTGGTCTGCAAAGTCTGCAATTCATAATGGAGCTACTGTACTGGCTATTGGAAGGAGGAGATTCTGAAGATAAGGAGGATGCCACTGGAAATGTTGAAATGAAAAATATTCAGCCGTTGGTCTTTGAAATTTCCTGTGATGTGTTTCAATCTAGATGCAAAGAACATGGAAAAATCAAAGTGCTCGAGTGGTTTAAATATGTTTTGGGTATTCCTGTTTATAGACTATAA	CCCTTCGTCGCCGCGGCTCTCGTCCGGGACACGGCTTTCCGGAGTAGAGCCCTTGGAGGTGTTAAGTGTGATGCTTCCATAATACATTTGGATGCTGTCAGCTAAGTTCACTTCTGAACTAAGGGGTTCCTCCAAATGTTGGCTGAAATTCATCCCAAGGCTGGTCTGCAAAGTCTGCAATTCATAATGGAGCTACTGTACTGGCTATTGGAAGGAGGAGATTCTGAAGATAAGGAGGATGCCACTGGAAATGTTGAAATGAAAAATATTCAGCCGTTGGTCTTTGAAATTTCCTGTGATGTGTTTCAATCTAGATGCAAAGAACATGGAAAAATCAAAGTGCTCGAGTGGTTTAAATATGTTTTGGGTATTCCTGTTTATAGACTATAATACTTTTCCAATTAAAATCCTCAGTTGTCACGCAGAAGAAGGTTAAGCTGTATTTGATTGCCAGTTTTACTGAAAATGCTTAGTATTTTACAGTATCACCAAATATATTTTGTTTAGCCAAGGTATAGGAAAAATAAAATAAATTGTATAGGTTGAAAAAAAAAAAAAAAA	Molecular cloning;Western blot;Immunoprecipitation;Immunohistochemistry (IHC);Immunofluorescence / Cellular localization;shRNA knockdown;Real-Time qPCR	Studies have shown that CRNDEP is upregulated in highly proliferating tissues, such as the parabasal layer of squamous epithelium, intestinal crypts, and spermatocytes, suggesting its potential involvement in cell proliferation regulation. Furthermore, based on bioinformatics analysis and the association between overexpression and stress granules, it is speculated that CRNDEP may also be involved in oxygen metabolism, but the exact molecular mechanism requires further elucidation.	Nucleus;Cytoplasmic stress granules (after artificial overexpression)	0.248612458	2.38E-09	0.315775108	1.87E-14	1.051361561	0.944343805	0.612360962	4.90846E-59	0.649278718	1.84142E-68	0.157047899	0.140885029	0.088957727	0.035162602	0.114925782	0.006429557	0.060630508	0.051421732	-0.084602194	0.04518129	-0.254742202	9.27E-10	0.883046687	1.096638799	-0.177973061	2.24E-05	-0.259119063	4.65E-10	0.955649793	1.029082417	0.755551457	0.988911271	0.995330095	0.993127465	0.596585751
ATXN8OS	ATXN8OS_1264	24040107	Internal ribosome entry segment activity of ATXN8 opposite strand RNA.	PloS one	2013	MCFTSKSFRPEPDMLYAQKAKGWQLTQDSGGWEVQDQCTRIWSKENLLALNTHSRRQKGKRENKVCVSTWQKSRGDRTYSSMATTPSMTKILEGCMYRKLKC	ATGTGCTTCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTTTACGCACAGAAGGCAAAAGGCTGGCAGCTCACGCAGGATTCTGGAGGCTGGGAAGTTCAAGACCAATGCACGAGAATTTGGTCTAAAGAGAATCTTCTTGCTCTGAACACACATAGTAGAAGGCAGAAGGGCAAGAGAGAGAACAAAGTCTGTGTCTCCACATGGCAGAAGAGCAGAGGAGACAGAACCTACTCCTCTATGGCAACCACCCCATCAATGACAAAAATCCTAGAAGGATGTATGTATAGGAAGTTGAAGTGTTGA	ATTCAGCGGATTGAAGGAAGAGGAGGAAGAGGACGGGGAGGACGATGAAGAGGAAGAGGAGGAAGGCTTCTTCCAGAAAGTGCTCACACCGCTTCTCTCTTGGCTTTTGAGCAGGCGACTCTGGCTGGGTCCCCAGTGCTCAAAGCTGCCACTGCCGTCCTGTTGCAGGCAGCCTCCCCCCGCCGGGCCGCCGGTGGAAGGAGACGGGTGGCTGAAGAGTTTCCAGCGGAGTCGCAGAATGTGCTTCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTTTACGCACAGAAGGCAAAAGGCTGGCAGCTCACGCAGGATTCTGGAGGCTGGGAAGTTCAAGACCAATGCACGAGAATTTGGTCTAAAGAGAATCTTCTTGCTCTGAACACACATAGTAGAAGGCAGAAGGGCAAGAGAGAGAACAAAGTCTGTGTCTCCACATGGCAGAAGAGCAGAGGAGACAGAACCTACTCCTCTATGGCAACCACCCCATCAATGACAAAAATCCTAGAAGGATGTATGTATAGGAAGTTGAAGTGTTGAGAAGAGAATGGCTCAGAGTCAAGCGGGAACAAGATTCAAACTTCAGAGAGAGAGGGAAGAAAAACATTTAAATATATCTGGCATAATCCAAGACTATTTACGACAAGTGTTCTGTGTTTCTAATAATAAAACAGACTTCACCTCGGAGTACCTGCAGAACTGGGACCCCAATGACCAGGGAGAATGAAGAACAACTTGTTGAAGATTGCCTTTTCTGACTCCCAGCTTCCACGGAGAGATTAACTCTGTTGGCTGAAGCCCTATTCCCAATTCCTTGGCTAGACCCTGGGTCCTTCATGTTAGAAAACCTGGCTTTACTACTACTACTACTACTACTACTACTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCATTTTTTAAAAATATATTATCTTATTTTACTATTTGATGTTATAATTGTTATATATTTTTCCACACTTCCTCATACTGCTTATCTCTTACTTAAGAATTTATGAATAAAGAATTGATTTTTCAATACATCCTTCCAAAAATTATCTGATGTTGAGTTAGTTGCTCTCTCTTGTGCATTCTCAGTCCTCACAAGCCTTTCTCAAACACAATGTTTATCAAAGAAAATTGTAGCAACCAATATACTTAGTGGAATTTCTCACAGAGTTTGAGTGTAGGAAACAGTATTCACTGTATATTAGTCATTTTGCTCCCAATAGAAGGTGC	Dual Luciferase Reporter Assay;Western Blot;2D PAGE;Mass Spectrometry (LC-MS/MS);Confocal Microscopy;Cloning;RT-PCR;5' RACE (RAPID cloning)	ATXN8OS contains a translatable short ORF, which may be translated via an IRES-mediated mechanism. Its specific biological function is unclear, but it may be associated with spinocerebellar ataxia type 8 (SCA8), a hereditary neurodegenerative disease.	Cytoplasm	0.244948594	1.00E-18	0.245689876	7.82E-19	1.092450142	0.961556017	0.128943719	4.24559E-06	0.097492459	0.000518583	0.155505598	0.152401438	0.031344238	0.265474092	0.086489274	0.002086327	0.037777834	0.034955442	-0.004723934	0.866753406	0.053928725	0.05526157	0.985615432	1.004988313	-0.023251125	0.408840479	-0.034192613	0.22444435	0.951372445	1.015512228	0.930855155	0.988227308	0.664648831	0.976068616	0.451033145